/*
    * Licensed to the Apache Software Foundation (ASF) under one
    * or more contributor license agreements.  See the NOTICE file
    * distributed with this work for additional information
    * regarding copyright ownership.  The ASF licenses this file
    * to you under the Apache License, Version 2.0 (the
    * "License"); you may not use this file except in compliance
    * with the License.  You may obtain a copy of the License at
    *
   *   http://www.apache.org/licenses/LICENSE-2.0
   *
   * Unless required by applicable law or agreed to in writing,
   * software distributed under the License is distributed on an
   * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
   * KIND, either express or implied.  See the License for the
   * specific language governing permissions and limitations
   * under the License.
   */
  package org.apache.maven.plugin.eclipse.it;
  
  import java.io.BufferedReader;
  import java.io.File;
  import java.io.FileReader;
  import java.io.IOException;
  import java.io.StringReader;
  import java.net.MalformedURLException;
  import java.util.ArrayList;
  import java.util.Arrays;
  import java.util.HashMap;
  import java.util.Iterator;
  import java.util.List;
  import java.util.Map;
  import java.util.Properties;
  import java.util.Map.Entry;
  
  import junit.framework.AssertionFailedError;
  
  import org.apache.maven.artifact.Artifact;
  import org.apache.maven.artifact.factory.ArtifactFactory;
  import org.apache.maven.artifact.factory.DefaultArtifactFactory;
  import org.apache.maven.artifact.handler.DefaultArtifactHandler;
  import org.apache.maven.artifact.handler.manager.ArtifactHandlerManager;
  import org.apache.maven.artifact.handler.manager.DefaultArtifactHandlerManager;
  import org.apache.maven.artifact.repository.ArtifactRepository;
  import org.apache.maven.artifact.repository.DefaultArtifactRepository;
  import org.apache.maven.artifact.repository.layout.DefaultRepositoryLayout;
  import org.apache.maven.plugin.MojoExecutionException;
  import org.apache.maven.plugin.eclipse.ExecutionFailedException;
  import org.apache.maven.plugin.eclipse.Messages;
  import org.apache.maven.plugin.ide.IdeUtils;
  import org.apache.maven.plugin.testing.AbstractMojoTestCase;
  import org.apache.maven.project.MavenProject;
  import org.apache.maven.shared.invoker.InvocationRequest;
  import org.apache.maven.shared.invoker.InvocationResult;
  import org.apache.maven.shared.test.plugin.BuildTool;
  import org.apache.maven.shared.test.plugin.PluginTestTool;
  import org.apache.maven.shared.test.plugin.ProjectTool;
  import org.apache.maven.shared.test.plugin.RepositoryTool;
  import org.apache.maven.shared.test.plugin.TestToolsException;
  import org.codehaus.classworlds.ClassRealm;
  import org.codehaus.plexus.PlexusContainer;
  import org.codehaus.plexus.util.FileUtils;
  import org.codehaus.plexus.util.IOUtil;
  import org.codehaus.plexus.util.StringUtils;
  import org.custommonkey.xmlunit.XMLAssert;
  import org.custommonkey.xmlunit.XMLUnit;
  import org.xml.sax.EntityResolver;
  import org.xml.sax.InputSource;
  import org.xml.sax.SAXException;
  
  /**
   * @author <a href="mailto:trygvis@inamo.no">Trygve Laugst&oslash;l</a>
   * @author <a href="mailto:fgiust@apache.org">Fabrizio Giustina</a>
   * @version $Id: AbstractEclipsePluginIT.java 751904 2009-03-09 23:13:33Z aheritier $
   */
  public abstract class AbstractEclipsePluginIT
      extends AbstractMojoTestCase
  {
  
      private BuildTool buildTool;
  
      private ProjectTool projectTool;
  
      private RepositoryTool repositoryTool;
  
      /**
       * Test repository directory.
       */
      protected static File localRepositoryDirectory = getTestFile( "target/test-classes/m2repo" );
  
      /**
       * Pom File
       */
      protected static File PomFile = new File( getBasedir(), "pom.xml" );
  
      /**
       * Group-Id for running test builds.
       */
      protected static final String GROUP_ID = "org.apache.maven.plugins";
 
     /**
      * Artifact-Id for running test builds.
      */
     protected static final String ARTIFACT_ID = "maven-eclipse-plugin";
 
     /**
      * Version under which the plugin was installed to the test-time local repository for running test builds.
      */
     protected static final String VERSION = "test";
 
     private static final String BUILD_OUTPUT_DIRECTORY = "target/surefire-reports/build-output";
 
     private static boolean installed = false;
 
     /**
      * The name of the directory used for comparison of expected output.
      */
     private static final String EXPECTED_DIRECTORY_NAME = "expected";
 
     /**
      * The XML Header used to check if the file contains XML content.
      */
     private static final String XML_HEADER = "<?xml";
 
     /**
      * @see org.codehaus.plexus.PlexusTestCase#setUp()
      */
     protected void setUp()
         throws Exception
     {
         if ( !installed )
         {
             System.out.println( "*** Running test builds; output will be directed to: " + BUILD_OUTPUT_DIRECTORY + "\n" );
         }
 
         super.setUp();
 
         buildTool = (BuildTool) lookup( BuildTool.ROLE, "default" );
 
         projectTool = (ProjectTool) lookup( ProjectTool.ROLE, "default" );
 
         repositoryTool = (RepositoryTool) lookup( RepositoryTool.ROLE, "default" );
 
         String mavenHome = System.getProperty( "maven.home" );
 
         // maven.home is set by surefire when the test is run with maven, but better make the test
         // run in IDEs without the need of additional properties
         if ( mavenHome == null )
         {
             String path = System.getProperty( "java.library.path" );
             String[] paths = StringUtils.split( path, System.getProperty( "path.separator" ) );
             for ( int j = 0; j < paths.length; j++ )
             {
                 String pt = paths[j];
                 if ( new File( pt, "mvn" ).exists() )
                 {
                     System.setProperty( "maven.home", new File( pt ).getAbsoluteFile().getParent() );
                     break;
                 }
 
             }
         }
 
         System.setProperty( "MAVEN_TERMINATE_CMD", "on" );
 
         synchronized ( AbstractEclipsePluginIT.class )
         {
             if ( !installed )
             {
                 PluginTestTool pluginTestTool = (PluginTestTool) lookup( PluginTestTool.ROLE, "default" );
 
                 localRepositoryDirectory =
                     pluginTestTool.preparePluginForUnitTestingWithMavenBuilds( PomFile, "test",
                                                                                localRepositoryDirectory );
 
                 System.out.println( "*** Installed test-version of the Eclipse plugin to: " + localRepositoryDirectory
                     + "\n" );
 
                 // Hack: to work around proxys and DTDs retrievals.
                 EntityResolver ignoreDtds = new EntityResolver()
                 {
 
                     public InputSource resolveEntity( String publicId, String systemId )
                         throws SAXException, IOException
                     {
                         return new InputSource( new StringReader( "<!ELEMENT ignored (#PCDATA)>" ) );
                     }
 
                 };
                 XMLUnit.setTestEntityResolver( ignoreDtds );
                 XMLUnit.setControlEntityResolver( ignoreDtds );
 
                 installed = true;
             }
         }
 
     }
 
     /**
      * @see org.codehaus.plexus.PlexusTestCase#tearDown()
      */
     protected void tearDown()
         throws Exception
     {
         super.tearDown();
 
         List containers = new ArrayList();
 
         containers.add( getContainer() );
 
         for ( Iterator iter = containers.iterator(); iter.hasNext(); )
         {
             PlexusContainer container = (PlexusContainer) iter.next();
 
             if ( container != null )
             {
                 container.dispose();
 
                 ClassRealm realm = container.getContainerRealm();
 
                 if ( realm != null )
                 {
                     realm.getWorld().disposeRealm( realm.getId() );
                 }
             }
         }
     }
 
     /**
      * Execute the eclipse:eclipse goal on a test project and verify generated files.
      *
      * @param projectName project directory
      * @throws Exception any exception generated during test
      */
     protected void testProject( String projectName )
         throws Exception
     {
         testProject( projectName, new Properties(), "clean", "eclipse" );
     }
 
     /**
      * Execute the eclipse:eclipse goal on a test project and verify generated files.
      *
      * @param basedir basedir of mvn execution
      * @throws Exception any exception generated during test
      */
     protected void testProject( File basedir )
         throws Exception
     {
         testProject( basedir, new Properties(), "clean", "eclipse" );
     }
 
     /**
      * Execute the eclipse:eclipse goal on a test project and verify generated files.
      *
      * @param projectName project directory
      * @param properties additional properties
      * @param cleanGoal TODO
      * @param genGoal TODO
      * @throws Exception any exception generated during test
      */
     protected void testProject( String projectName, Properties properties, String cleanGoal, String genGoal )
         throws Exception
     {
         File basedir = getTestFile( "target/test-classes/projects/" + projectName );
         testProject( basedir, properties, cleanGoal, genGoal );
     }
 
     /**
      * Execute the eclipse:eclipse goal on a test project and verify generated files.
      *
      * @param basedir basedir of mvn execution
      * @param properties additional properties
      * @param cleanGoal TODO
      * @param genGoal TODO
      * @throws Exception any exception generated during test
      */
     protected void testProject( File basedir, Properties properties, String cleanGoal, String genGoal )
         throws Exception
     {
         File pom = new File( basedir, "pom.xml" );
 
         String pluginSpec = getPluginCLISpecification();
 
         List goals = new ArrayList();
 
         goals.add( pluginSpec + cleanGoal );
         goals.add( pluginSpec + genGoal );
 
         executeMaven( pom, properties, goals );
 
         MavenProject project = readProject( pom );
 
         String outputDirPath =
             IdeUtils.getPluginSetting( project, "org.apache.maven.plugins:maven-eclipse-plugin", "outputDir", null );
         File projectOutputDir = basedir;
 
         if ( outputDirPath != null )
         {
             File outputDir = new File( basedir, outputDirPath );
             outputDir.mkdirs();
             projectOutputDir = new File( outputDir, project.getArtifactId() );
         }
 
         compareDirectoryContent( basedir, projectOutputDir );
     }
 
     /**
      * Execute the eclipse:configure-workspace goal on a test project and verify generated files.
      *
      * @param projectName project directory
      * @throws Exception any exception generated during test
      */
     protected void testWorkspace( String projectName )
         throws Exception
     {
         testWorkspace( projectName, new Properties(), "configure-workspace" );
     }
 
     /**
      * Execute the eclipse:configure-workspace goal on a test project and verify generated files.
      *
      * @param projectName project directory
      * @throws Exception any exception generated during test
      */
     protected void testWorkspace( String projectName, String goal )
         throws Exception
     {
         testWorkspace( projectName, new Properties(), goal );
     }
 
     /**
      * Execute the eclipse:configure-workspace goal on a test project and verify generated files.
      *
      * @param projectName project directory
      * @param properties additional properties
      * @param cleanGoal TODO
      * @param genGoal TODO
      * @throws Exception any exception generated during test
      */
     protected void testWorkspace( String projectName, Properties properties, String genGoal )
         throws Exception
     {
         File basedir = getOutputDirectory( projectName );
 
         File pom = new File( basedir, "pom.xml" );
 
         String pluginSpec = getPluginCLISpecification();
 
         List goals = new ArrayList();
 
         goals.add( pluginSpec + genGoal );
 
         executeMaven( pom, properties, goals );
 
         MavenProject project = readProject( pom );
 
         String outputDirPath =
             IdeUtils.getPluginSetting( project, "org.apache.maven.plugins:maven-eclipse-plugin", "outputDir", null );
         File outputDir;
         File projectOutputDir = basedir;
 
         if ( outputDirPath == null )
         {
             outputDir = basedir;
         }
         else
         {
             outputDir = new File( basedir, outputDirPath );
             outputDir.mkdirs();
             projectOutputDir = new File( outputDir, project.getArtifactId() );
         }
 
         compareDirectoryContent( basedir, projectOutputDir );
 
     }
 
     protected File getOutputDirectory( String projectName )
     {
         return getTestFile( "target/test-classes/projects/" + projectName );
     }
 
     protected File getTestWorkspaceWorkDirectory( String projectName )
     {
         return new File( this.getOutputDirectory( projectName ), ".metadata" );
     }
 
     protected void executeMaven( File pom, Properties properties, List goals )
         throws TestToolsException, ExecutionFailedException
     {
         executeMaven( pom, properties, goals, true );
     }
 
     protected void executeMaven( File pom, Properties properties, List goals, boolean switchLocalRepo )
         throws TestToolsException, ExecutionFailedException
     {
         System.out.println( "  Building " + pom.getParentFile().getName() );
 
         new File( BUILD_OUTPUT_DIRECTORY ).mkdirs();
 
         NullPointerException npe = new NullPointerException();
         StackTraceElement[] trace = npe.getStackTrace();
 
         File buildLog = null;
 
         for ( int i = 0; i < trace.length; i++ )
         {
             StackTraceElement element = trace[i];
 
             String methodName = element.getMethodName();
 
             if ( methodName.startsWith( "test" ) && !methodName.equals( "testProject" ) )
             {
                 String classname = element.getClassName();
 
                 buildLog = new File( BUILD_OUTPUT_DIRECTORY, classname + "_" + element.getMethodName() + ".build.log" );
 
                 break;
             }
         }
 
         if ( buildLog == null )
         {
             buildLog = new File( BUILD_OUTPUT_DIRECTORY, "unknown.build.log" );
         }
 
         InvocationRequest request = buildTool.createBasicInvocationRequest( pom, properties, goals, buildLog );
         request.setUpdateSnapshots( false );
         request.setShowErrors( true );
 
         request.setDebug( true );
 
         if ( switchLocalRepo )
         {
             request.setLocalRepositoryDirectory( localRepositoryDirectory );
         }
 
         InvocationResult result = buildTool.executeMaven( request );
 
         if ( result.getExitCode() != 0 )
         {
             String buildLogUrl = buildLog.getAbsolutePath();
 
             try
             {
                 buildLogUrl = buildLog.toURL().toExternalForm();
             }
             catch ( MalformedURLException e )
             {
             }
 
             throw new ExecutionFailedException( "Failed to execute build.\nPOM: " + pom + "\nGoals: "
                 + StringUtils.join( goals.iterator(), ", " ) + "\nExit Code: " + result.getExitCode() + "\nError: "
                 + result.getExecutionException() + "\nBuild Log: " + buildLogUrl + "\n", result );
         }
     }
 
     protected MavenProject readProject( File pom )
         throws TestToolsException
     {
         return projectTool.readProject( pom, localRepositoryDirectory );
     }
 
     protected String getPluginCLISpecification()
     {
         String pluginSpec = GROUP_ID + ":" + ARTIFACT_ID + ":";
 
         // String pluginVersion = System.getProperty( "pluginVersion" );
         //
         // if ( pluginVersion != null )
         // {
         // pluginSpec += pluginVersion + ":";
         // }
         //
         // System.out.println( "\n\nUsing Eclipse plugin version: " + pluginVersion + "\n\n" );
 
         // try using the test-version installed during setUp()
         pluginSpec += VERSION + ":";
 
         return pluginSpec;
     }
 
     /**
      * @param basedir the base directory of the project
      * @param projectOutputDir the directory where the eclipse plugin will write the output files.
      * @throws MojoExecutionException
      */
     protected void compareDirectoryContent( File basedir, File projectOutputDir )
         throws MojoExecutionException
     {
         File[] expectedDirectories = getExpectedDirectories( basedir );
 
         for ( int i = 0; i < expectedDirectories.length; i++ )
         {
             File expectedDirectory = expectedDirectories[i];
             File[] expectedFilesToCompare = getExpectedFilesToCompare( expectedDirectory );
 
             for ( int j = 0; j < expectedFilesToCompare.length; j++ )
             {
                 File expectedFile = expectedFilesToCompare[j];
                 File actualFile = getActualFile( projectOutputDir, basedir, expectedFile );
 
                 if ( !actualFile.exists() )
                 {
                     throw new AssertionFailedError( "Expected file not found: " + actualFile.getAbsolutePath() );
                 }
 
                 assertFileEquals( expectedFile, actualFile );
 
             }
         }
     }
 
     protected void assertFileEquals( File expectedFile, File actualFile )
         throws MojoExecutionException
     {
         if ( !actualFile.exists() )
         {
             throw new AssertionFailedError( "Expected file not found: " + actualFile.getAbsolutePath() );
         }
 
         HashMap variableReplacement = new HashMap();
         variableReplacement.put( "${basedir}",
                                  IdeUtils.fixSeparator( IdeUtils.getCanonicalPath( new File( getBasedir() ) ) ) );
         variableReplacement.put( "${M2_REPO}",
                                  IdeUtils.fixSeparator( IdeUtils.getCanonicalPath( localRepositoryDirectory ) ) );
 
         String expectedFileContents = preprocess( expectedFile, variableReplacement );
         String actualFileContents = preprocess( actualFile, null );
 
         if ( isXml( expectedFile ) )
         {
             assertXmlFileEquals( expectedFile, expectedFileContents, actualFile, actualFileContents );
         }
         else
         {
             assertTextFileEquals( expectedFile, expectedFileContents, actualFile, actualFileContents );
         }
     }
 
     /**
      * Assert that two XML files are equal.
      *
      * @param expectedFile the expected file - only used for path information
      * @param expectedFileContents the contents of the expected file
      * @param actualFile the actual file - only used for path information
      * @param actualFileContents the contents of the actual fiel
      * @throws MojoExecutionException failures.
      */
     private void assertXmlFileEquals( File expectedFile, String expectedFileContents, File actualFile,
                                       String actualFileContents )
         throws MojoExecutionException
     {
         try
         {
             XMLAssert.assertXMLEqual( "Comparing '" + IdeUtils.getCanonicalPath( actualFile ) + "' against '"
                 + IdeUtils.getCanonicalPath( expectedFile ), expectedFileContents, actualFileContents );
         }
         catch ( IOException e )
         {
             throw new MojoExecutionException( IdeUtils.getCanonicalPath( expectedFile )
                 + "assertXmlFileEquals failure: IO " + e.getMessage(), e );
         }
         catch ( SAXException e )
         {
             throw new MojoExecutionException( "assertXmlFileEquals failure: SAX " + e.getMessage(), e );
         }
     }
 
     /**
      * Assert that two text files are equals. Lines that start with # are comments and ignored.
      *
      * @param expectedFile the expected file - only used for path information
      * @param expectedFileContents the contents of the expected file
      * @param actualFile the actual file - only used for path information
      * @param actualFileContents the contents of the actual fiel
      * @throws MojoExecutionException failures.
      */
     private void assertTextFileEquals( File expectedFile, String expectedFileContents, File actualFile,
                                        String actualFileContents )
         throws MojoExecutionException
     {
         List expectedLines = getLines( expectedFileContents );
         List actualLines = getLines( actualFileContents );
         for ( int i = 0; i < expectedLines.size(); i++ )
         {
             String expected = expectedLines.get( i ).toString();
             if ( actualLines.size() <= i )
             {
                 fail( "Too few lines in the actual file. Was " + actualLines.size() + ", expected: "
                     + expectedLines.size() );
             }
             String actual = actualLines.get( i ).toString();
             if ( expected.startsWith( "#" ) && actual.startsWith( "#" ) )
             {
                 // ignore comments, for settings file
                 continue;
             }
             assertEquals( "Comparing '" + IdeUtils.getCanonicalPath( actualFile ) + "' against '"
                 + IdeUtils.getCanonicalPath( expectedFile ) + "' at line #" + ( i + 1 ), expected, actual );
         }
         assertTrue( "Unequal number of lines.", expectedLines.size() == actualLines.size() );
     }
 
     /**
      * Preprocess the file so that equals comparison can be done. Preprocessing may vary based on filename.
      *
      * @param file the file being processed
      * @param variables if not null, then replace all keys with the corresponding values in the expected string.
      *
      * @return processed input
      */
     private String preprocess( File file, Map variables )
         throws MojoExecutionException
     {
         String result = null;
         try
         {
             result = FileUtils.fileRead( file, "UTF-8" );
         }
         catch ( IOException ex )
         {
             throw new MojoExecutionException( "Unable to read file", ex );
         }
         result = replaceVariables( result, variables );
         result = IdeUtils.fixWindowsDriveURI( result );
 
         /*
          * NOTE: This is another hack to compensate for some metadata files that contain a complete XML file as the
          * value for a key like "org.eclipse.jdt.ui.formatterprofiles" from "org.eclipse.jdt.ui.prefs". Line terminators
          * in this value are platform-dependent.
          *
          */
         if ( file.getName().endsWith( ".prefs" ) )
         {
             result = normalizeNewlineTerminators( result );
         }
 
         /*
          * NOTE: This is a hack to compensate for files that contain generated values like dependent-object in
          * org.eclipse.wst.common.component.
          *
          * Regex would be a better solution.
          */
         if ( file.getName().equals( "org.eclipse.wst.common.component" ) || file.getName().equals( ".modulemaps" )
             || file.getName().equals( "application.xml" ) )
         {
             result = result.replaceAll( "_\\d+", "" );
         }
         return result;
     }
 
     /**
      * Normalize line terminators into \n. \r\n, \r, \n all get changed into \n.
      *
      * @param input the string to normalize
      * @return string with line terminators normalized
      */
     private String normalizeNewlineTerminators( String input )
     {
         return input.replaceAll( "(\\\\r\\\\n)|(\\\\n)|(\\\\r)", "\\n" );
     }
 
     /**
      * @param str input string
      * @param variables map of variables (keys) and replacement value (values)
      * @return the string with all variable values replaced.
      */
     private String replaceVariables( String str, Map variables )
     {
         String result = str;
         if ( variables != null && !variables.isEmpty() )
         {
             Iterator iter = variables.entrySet().iterator();
             while ( iter.hasNext() )
             {
                 Map.Entry entry = (Entry) iter.next();
                 String variable = (String) entry.getKey();
                 String replacement = (String) entry.getValue();
                 result = StringUtils.replace( result, variable, replacement );
             }
         }
 
         return result;
     }
 
     protected void assertContains( String message, String full, String substring )
     {
         if ( full == null || full.indexOf( substring ) == -1 )
         {
             StringBuffer buf = new StringBuffer();
             if ( message != null )
             {
                 buf.append( message );
             }
             buf.append( ". " );
             buf.append( "Expected \"" );
             buf.append( substring );
             buf.append( "\" not found" );
             fail( buf.toString() );
         }
     }
 
     protected void assertDoesNotContain( String message, String full, String substring )
     {
         if ( full == null || full.indexOf( substring ) != -1 )
         {
             StringBuffer buf = new StringBuffer();
             if ( message != null )
             {
                 buf.append( message );
             }
             buf.append( ". " );
             buf.append( "Unexpected \"" );
             buf.append( substring );
             buf.append( "\" found" );
             fail( buf.toString() );
         }
     }
 
     private List getLines( String input )
         throws MojoExecutionException
     {
         try
 
         {
             List lines = new ArrayList();
 
             BufferedReader reader = new BufferedReader( new StringReader( input ) );
 
             String line;
 
             while ( ( line = reader.readLine() ) != null )
             {
                 lines.add( line );
             }
 
             IOUtil.close( reader );
 
             return lines;
         }
         catch ( IOException e )
         {
             throw new MojoExecutionException( "failed to getLines", e );
         }
     }
 
     /**
      * @param basedir base directory to search for directories named "expected"
      * @return an array of directories that match "expected"
      */
     private File[] getExpectedDirectories( File basedir )
     {
         List expectedDirectories = new ArrayList();
         List subdirectories = new ArrayList();
 
         File[] allFiles = basedir.listFiles();
         if ( allFiles != null )
         {
             for ( int i = 0; i < allFiles.length; i++ )
             {
                 File currentFile = allFiles[i];
                 if ( currentFile.isDirectory() )
                 {
                     if ( currentFile.getName().equals( EXPECTED_DIRECTORY_NAME ) )
                     {
                         expectedDirectories.add( currentFile );
                     }
                     else
                     {
                         subdirectories.add( currentFile );
                     }
                 }
             }
         }
         if ( !subdirectories.isEmpty() )
         {
             for ( Iterator iter = subdirectories.iterator(); iter.hasNext(); )
             {
                 File subdirectory = (File) iter.next();
                 File[] subdirectoryFiles = getExpectedDirectories( subdirectory );
                 expectedDirectories.addAll( Arrays.asList( subdirectoryFiles ) );
             }
         }
         return (File[]) expectedDirectories.toArray( new File[expectedDirectories.size()] );
     }
 
     /**
      * @param expectedDirectory the expected directory to locate expected Files
      * @return an array of Files found under the expectedDirectory - will recurse through the directory structure.
      */
     private File[] getExpectedFilesToCompare( File expectedDirectory )
     {
         List expectedFiles = new ArrayList();
         List subdirectories = new ArrayList();
 
         File[] allFiles = expectedDirectory.listFiles();
         if ( allFiles != null )
         {
             for ( int i = 0; i < allFiles.length; i++ )
             {
                 File currentFile = allFiles[i];
                 if ( currentFile.isDirectory() )
                 {
                     subdirectories.add( currentFile );
                 }
                 else
                 {
                     expectedFiles.add( currentFile );
                 }
             }
         }
         if ( !subdirectories.isEmpty() )
         {
             for ( Iterator iter = subdirectories.iterator(); iter.hasNext(); )
             {
                 File subdirectory = (File) iter.next();
                 File[] subdirectoryFiles = getExpectedFilesToCompare( subdirectory );
                 expectedFiles.addAll( Arrays.asList( subdirectoryFiles ) );
             }
         }
 
         return (File[]) expectedFiles.toArray( new File[expectedFiles.size()] );
     }
 
     /**
      * Locate the actual file needed for comparison. The expectedFile has the baseDir prefix removed and the resulting
      * relative path used to locate the file within the projectOutputDir.
      *
      * @param projectOutputDir the directory where the eclipse plugin writes files to
      * @param basedir the base dir of the project being tested
      * @param expectedFile the expected file used to compare to the actual file
      * @return the actual file needed for comparison against the expectedFile
      * @throws MojoExecutionException failures for obtaining actual file.
      */
     private File getActualFile( File projectOutputDir, File basedir, File expectedFile )
         throws MojoExecutionException
     {
         String relativePath = IdeUtils.toRelativeAndFixSeparator( basedir, expectedFile, false );
         relativePath = relativePath.replaceFirst( EXPECTED_DIRECTORY_NAME, "" );
         File actualFile = new File( projectOutputDir, relativePath );
         try
         {
             return actualFile.getCanonicalFile();
         }
         catch ( IOException e )
         {
             throw new MojoExecutionException( Messages.getString( "EclipsePlugin.cantcanonicalize", actualFile.getAbsolutePath() ), e ); //$NON-NLS-1$
         }
     }
 
     /**
      * Test if the file contains xml content.
      *
      * @param f the file to test
      * @return true if the file contains xml content, false otherwise.
      */
     private boolean isXml( File f )
     {
         FileReader reader = null;
         try
         {
             reader = new FileReader( f );
             char[] header = new char[XML_HEADER.length()];
             reader.read( header );
             return XML_HEADER.equals( new String( header ) );
         }
         catch ( Exception e )
         {
             return false;
         }
         finally
         {
             IOUtil.close( reader );
         }
     }
 
     /**
      * Return the not available marker file for the specified artifact details.
      *
      * @param groupId group id of artifact
      * @param artifactId artifact id of artifact
      * @param version version of artifact
      * @param classifier the classifier of the artifact
      * @param inClassifier the sources/javadocs to be attached
      * @return the not available marker file
      * @throws Exception failures.
      * @see IdeUtils#createArtifactWithClassifier(String, String, String, String, String, ArtifactFactory)
      */
     protected File getNotAvailableMarkerFile( String groupId, String artifactId, String version,
                                                      String classifier, String inClassifier )
         throws Exception
     {
         // HACK: START
         // TODO: Work out how to use Plexus to obtain these values
         String url = "file://" + localRepositoryDirectory;
         ArtifactRepository localRepository =
             new DefaultArtifactRepository( "local", url, new DefaultRepositoryLayout() );
 
         ArtifactFactory artifactFactory = new DefaultArtifactFactory();
 
         DefaultArtifactHandler javaSourceArtifactHandler = new DefaultArtifactHandler( "java-source" );
         setVariableValueToObject( javaSourceArtifactHandler, "extension", "jar");
 
         DefaultArtifactHandler javadocArtifactHandler = new DefaultArtifactHandler( "javadoc" );
         setVariableValueToObject( javadocArtifactHandler, "extension", "jar");
 
         Map artifactHandlers = new HashMap();
         artifactHandlers.put( "java-source", javaSourceArtifactHandler );
         artifactHandlers.put( "javadoc", javadocArtifactHandler );
 
         ArtifactHandlerManager artifactHandlerManager = new DefaultArtifactHandlerManager();
         setVariableValueToObject( artifactHandlerManager, "artifactHandlers", artifactHandlers);
         setVariableValueToObject( artifactFactory, "artifactHandlerManager", artifactHandlerManager);
         // HACK: END
 
         Artifact artifact =
             IdeUtils.createArtifactWithClassifier( groupId, artifactId, version, classifier, inClassifier,
                                                    artifactFactory);
         return IdeUtils.getNotAvailableMarkerFile( localRepository, artifact );
     }
 
     /**
      * Assert that the not available marker file exists for the specified artifact details.
      *
      * @param groupId group id of artifact
      * @param artifactId artifact id of artifact
      * @param version version of artifact
      * @param classifier the classifier of the artifact
      * @param inClassifier the sources/javadocs to be attached
      * @throws Exception failures
      */
     protected void assertNotAvailableMarkerFileExists( String groupId, String artifactId, String version,
                                                        String classifier, String inClassifier ) throws Exception
     {
         File markerFile = getNotAvailableMarkerFile( groupId, artifactId, version, classifier, inClassifier );
         assertTrue( "The \"Not Available\" marker file does not exist: " + markerFile, markerFile.exists() );
     }
 
     /**
      * Assert that the not available marker file does not exist for the specified artifact details.
      *
      * @param groupId group id of artifact
      * @param artifactId artifact id of artifact
      * @param version version of artifact
      * @param classifier the classifier of the artifact
      * @param inClassifier the sources/javadocs to be attached
      * @throws Exception failures
      */
     protected void assertNotAvailableMarkerFileDoesNotExist( String groupId, String artifactId, String version,
                                                        String classifier, String inClassifier ) throws Exception
     {
         File markerFile = getNotAvailableMarkerFile( groupId, artifactId, version, classifier, inClassifier );
         assertTrue( "The \"Not Available\" marker file incorrectly exists: " + markerFile, !markerFile.exists() );
     }
 
 }